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QPROF

  Query of PROtein Features (QPROF) is a tool for creating a list of geometrical measurment criteria and searching for protein structures which satisfy those criteria. The searchable geometrical measurements are based on a set of secondary strutural elements(SSEs) that include a reference element (either an alpha helix or beta strand) and topologically adjacent elements, i.e. elements that come before and after the reference element in the protein chain.



Examples of How-to:
1. Find structures containing DNA-binding homeodomain.
2. Load all measurements for an alpha-helix in a particular pdb file.